AIMS: An Automatic Semantic Machine Learning Microservice Framework to Support Biomedical and Bioengineering Research
Journal article
Authors | Yu, H., O'Neill, S. and Kermanizadeh, A. |
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Abstract | The fusion of machine learning and biomedical research offers novel ways to understand, diagnose, and treat various health conditions. However, the complexities of biomedical data, coupled with the intricate process of developing and deploying machine learning solutions, often pose significant challenges to researchers in these fields. Our pivotal achievement in this research is the introduction of the Automatic Semantic Machine Learning Microservice Framework (AIMS). AIMS addresses these challenges by automating various stages of the machine learning pipeline, with a particular emphasis on the ontology of machine learning services tailored for the biomedical domain. This ontology encompasses everything from task representation, service modeling, and knowledge acquisition to knowledge reasoning and the establishment of a self-supervised learning policy. Our framework has been crafted to prioritize model interpretability, integrate domain knowledge effortlessly, and handle biomedical data with efficiency. Additionally, AIMS boasts a distinctive feature: it leverages self-supervised knowledge learning through reinforcement learning techniques, paired with an ontology-based policy recording schema. This enables it to autonomously generate, fine-tune, and continually adapt to machine learning models, especially when faced with new tasks and data. Our work has two standout contributions of demonstrating that machine learning processes in the biomedical domain can be automated, while integrating a rich domain knowledge base and providing a way for machines to have a self-learning ability, ensuring they handle new tasks effectively. To showcase AIMS in action, we've highlighted its prowess in three case studies from biomedical tasks. These examples emphasize how our framework can simplify research routines, uplift the caliber of scientific exploration, and set the stage for notable advances. |
Keywords | AI automation; Biomedical; Machine learning |
Year | 2023 |
Journal | Bioengineering |
Journal citation | 10 (10), pp. 1-18 |
Publisher | MDPI Open Access Journals |
ISSN | 2306-5354 |
Digital Object Identifier (DOI) | https://doi.org/10.3390/bioengineering10101134 |
Web address (URL) | https://www.mdpi.com/2306-5354/10/10/1134 |
Accepted author manuscript | License File Access Level Open |
Publisher's version | License File Access Level Open |
Output status | Published |
Publication dates | |
Online | 27 Sep 2023 |
Publication process dates | |
Accepted | 25 Sep 2023 |
Deposited | 09 Oct 2023 |
https://repository.derby.ac.uk/item/q199v/aims-an-automatic-semantic-machine-learning-microservice-framework-to-support-biomedical-and-bioengineering-research
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Accepted author manuscript
MDPI_Bioengineering (3).pdf | ||
License: CC BY 4.0 | ||
File access level: Open |
Publisher's version
MDPI_Bioengineering (3).pdf | ||
License: CC BY 4.0 | ||
File access level: Open |
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